EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.

A Python parser for the BRENDA database

Python package for modelling enzyme reactions using Monte carlo sampling from parameter distributions

A spatially explicit trait- and individual-based microbial systems modelling framework

Computing Protein Electric Field Topology in python, built for high-throughput accelerated calculations

Automated enzyme reaction path modeling from PDB structures

The code from the paper "An automated protocol for modelling peptide substrates to proteases"

🌈 chromhandler is a Python package designed to streamline the processing and analysis of chromatographic data, enabling efficient metadata enrichment and conversion to EnzymeML format for further analysis.

Predict enzymatic impact on biogeochemical cycles from proteomes.

Trim, extract, and convert GEMs

Fit enzymatic kinetics data set directly from excel with the Michaelis-Menten equation

A tool for protein mutation effect prediction.

Calculate Vmax and Km from substrate concentration and reaction velocity

Genome scAle Substrate Specific Enzyme pRediction

The CAVER PyMOL for modern PyMOL(^v2.5, ^v3.02; PyQt) using Caver 3.02 software.

Simple Vmax and Km calculator for enzyme reactivity.

Orenza database update scripts

Python script for enzyme sequence clustering and metabolic pathway comparison.

embracing the flawed and imperfect

🗝️ Explore a re-imagined classic adventure game with engaging gameplay, multiple languages, and an immersive world built in Python 3 and PyQt6.