Python package with helper tools for the nf-core community.

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

OVO, an open-source ecosystem for de novo protein design

Configure workflow/pipeline tests using yaml files.

Python wrapper around Nextflow.

Formalizing and benchmarking open problems in single-cell genomics

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

AMR/VF LGT focused bacterial genomics analysis workflow

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

Image Mass Cytometry analysis pipeline

Automatic Packaging and Distribution of Bioinformatics Pipelines

Nextflow pipeline for hyperparameter optimization of machine learning models

Nextflow workflow syntax highlighting and snippets for Sublime Text 4

(current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

The Microbial Co-occurrence Network Explorer

Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.

A Nextflow pipeline for protein binder design